PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 212aa    MW: 23357.5 Da    PI: 7.0983
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-4035PU_refplantGDBView CDS
gnl|UG|Pgl#S55338175PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP24.64.2e-082234971
    E2F_TDP 49 ilNVLealnliekkekneirwkg 71
               +lNVL+a+++i+k ek+ei+wkg
  Pgl007121  2 ALNVLMAMEIISK-EKKEIQWKG 23
               69***********.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-10229IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.16E-3928131IPR014889Transcription factor DP, C-terminal
SMARTSM011386.6E-4830161IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-3730136No hitNo description
PfamPF087811.7E-3731168IPR014889Transcription factor DP, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
XALNVLMAME IISKEKKEIQ WKGLPKTSIN DVEQLKAEKL LMKSRIEKKA SYFQELEEQI  60
VGLQNLVKRN ESIYGSGNTP SGGVSLPFIL VQTHPRATVE IEISEDMQLV HFDFNSTPFG  120
LHGDAYVLKE MNFCKRPFSN GADSGHEDCC NGTGLAESKS PVSNMCQNLI PYHSPLPSVG  180
ASYPMSSTPG RTCSSPPVPG ILKARVKHEN MT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.115160.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470130.12e-89PREDICTED: transcription factor-like protein DPB isoform X2
RefseqXP_011470129.12e-89PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY24e-74DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D6QZS21e-101A0A0D6QZS2_ARACU; Uncharacterized protein
TrEMBLD5ABL11e-101D5ABL1_PICSI; Putative uncharacterized protein
STRINGSolyc10g078430.1.11e-84(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-75Transcription factor DP